That seems to have fixed it. Thank you.
Previously, Cookie only appeared in the menu bar. Now it appears on the dock as well. Did I miss something in the setup?

I just emailed a crash log after reinstalling, deleting the Container folder and running setup. As soon as I checked the Safari browser checkbox I got a pop up window requesting access to a system folder (I think). When I clicked allow the app crashed and now keeps trying to verify. This is getting very frustrating.

There are no crash logs visible.
Correction, there is one for
CIJScannerRegister_2017-04-19-033232
Not sure this has anything to do with Cookie though

Yes, I am logged into the correct account. As I said, the update downloaded. I have version 5.5.4 and it will not open. I also deleted the app completely and downloaded again. It will not run at all.

Please verify that Cookie will still run on Mac OS X El Capitan. See other threads and comments about this and problems with updates, damaged applications, etc.
Please fix this as soon as possible.

I downloaded 5.5.4 from the app store yesterday. My applications folder shows 5.5.4 as the current version. The Mac app store shows the last update was version 5.5.2 and nothing for the latest version. There are no updates available. I constantly get app id user requests and a screen verifying the app with no further results. This only happens when using Safari and goes away after awhile when quitting Safari. The results are making it very difficult to use my computer as the verification screen keeps popping up in the middle of my work.

No, it does not. I keep getting a screen asking for my Apple ID because Cookie was purchased on another computer. After about a minute a screen comes up verifying the app. this happens over and over. I have restarted the computer without success. Version 5.5.4 is not fixing the issue.

As noted from a previous reply, deleting the app and reinstalling does not seem to fix the problem. Is there a way to roll back to a previous, stable, version without losing favorite cookies?
Also, is there a way to prevent Cookie from even starting until this is resolved? It is not present in system/users and groups, login items.

After deleting the folder above and doing a restart the Cookie App will not start. Keeps asking for Apple Id and a box verifying the app keeps coming up continuously. Cookie App will not start. Tried this several times with the same result.

After the latest update I can no longer open Cookie. Message says the app is damaged and must be deleted and downloaded again. Is there a way to resolve this without losing any of my previous settings and favorites?

I have the read me button.
I click on it and get a 404 error.
Get the same 404 error when I click on the link above.
Purchased from the Mac App Store and installed the scripts before.
They do not work consistently and takes a long time to remove non-favorites and cookies.
Help!